[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: weaver & s)

EMDB-41637:
Asymmetric cryoEM reconstruction of Mayaro virus
Method: single particle / : Chmielewski D, Kaelber J, Jin J, Weaver S, Auguste AJ, Chiu W

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations
Method: single particle / : Hsieh CL, McLellan JS

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation
Method: single particle / : Hsieh CL, McLellan JS

EMDB-29587:
MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fyo:
MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-29491:
CryoEM structure of E.coli transcription elongation complex
Method: single particle / : Duan W, Serganov A

EMDB-29494:
CryoEM structure of E.coli transcription elongation complex bound to ppGpp
Method: single particle / : Duan W, Serganov A

PDB-8fvr:
CryoEM structure of E.coli transcription elongation complex
Method: single particle / : Duan W, Serganov A

PDB-8fvw:
CryoEM structure of E.coli transcription elongation complex bound to ppGpp
Method: single particle / : Duan W, Serganov A

EMDB-29586:
MicroED structure of A2A from plasma milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-29588:
MicroED structure of Proteinase K from xenon milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-29590:
MicroED structure of Proteinase K from argon milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-29595:
MicroED structure of Proteinase K from oxygen milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-29596:
MicroED structure of Proteinase K from nitrogen milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fyn:
MicroED structure of A2A from plasma milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fyp:
MicroED structure of Proteinase K from xenon milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fyq:
MicroED structure of Proteinase K from argon milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fyr:
MicroED structure of Proteinase K from oxygen milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

PDB-8fys:
MicroED structure of Proteinase K from nitrogen milled lamellae
Method: electron crystallography / : Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

EMDB-26336:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

EMDB-26337:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26338:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26339:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u50:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

PDB-7u51:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u52:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u53:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-23378:
CryoEM structure of Mayaro virus
Method: single particle / : Chmielewski D, Kaelber J

PDB-7lih:
CryoEM structure of Mayaro virus icosahedral subunit
Method: single particle / : Chmielewski D, Kaelber JT, Jin J, Weaver S, Auguste AJ, Chiu W

EMDB-23199:
Generation of ordered protein assemblies using rigid three-body fusion
Method: single particle / : Yao Q, Vulovic I, Baker D, Jensen G

EMDB-23531:
D3-19.19
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23532:
D3-19.14
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23533:
D3-1.5C
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23534:
Designed oligomer D2-1.1B
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23535:
Designed oligomer D2-1.4H
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23536:
Designed oligomer D2-1.1D
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23537:
DARPin 21.8.HSA-C9.v2 with HSA complex
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-23538:
DARPin HAS local refinement
Method: single particle / : Park YJ, Ivan V, Baker D, Veesler D

EMDB-21559:
Single particle cryoEM structure of V. cholerae Type IV competence pilus secretin PilQ
Method: single particle / : Weaver SJ

PDB-6w6m:
Single particle cryoEM structure of V. cholerae Type IV competence pilus secretin PilQ
Method: single particle / : Sazinsky MH, Weaver SJ

PDB-6djy:
Fako virus
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7941:
Fako virus empty particles aligned to the best decoy map (asymmetric reconstruction) showing the locations of the polymerase complexes
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7944:
Fako virus full particles, icosahedral reconstruction
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7945:
Fako virus empty particles, icosahedral reconstruction
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7948:
Fako virus empty particles, D2-symmetrized reconstruction
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7949:
Fako virus full particles, D2-symmetrized reconstruction
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

EMDB-7953:
Fako virus empty particles, projection-matching reconstruction without imposed symmetry
Method: single particle / : Kaelber JT, Jiang W, Weaver SC, Auguste AJ, Chiu W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more